2017 and in press
Dänhardt J, Nilsson L, Hristov J, Alkan Olsson J, Brady M, Olsson P, Smith HG, Clough Y (2017) Ekologiska fokusarealer i samverkan - Utvärdering av effekter på ekosystemtjänster, jordbruk och administration. Naturvårdsverket Rapport 6773. ISBN 978-91-620-6773-1. [report to the Swedish EPA on collective implementation of ecological focus areas and impacts on ecosystem services, agriculture and administration, summary in English]
Schmidt FA, Ribas CR, Sobrinho TG, Ubaidillah R, Schoereder JH, Clough Y, Tscharntke T (in press) Similar alpha and beta diversity changes in tropical ant communities, comparing savannas to rainforests in Brazil and Indonesia. Oecologia. Accepted September 9th 2017
Clough Y, Philpott S, Tscharntke T (2017). Services and disservices of ant communities in tropical cacao and coffee agroforestry systems. In Ant-Plant Interactions: Impacts of Humans on Terrestrial Ecosystems, Ed. by: Paulo S. Oliveira, Suzanne Koptur. Cambridge University Press. August 2017. ISBN 978-11-071-5975-4.
Barnes AD, Allen K, Kreft H, Clough Y, Jochum M, Veldkamp E, Clough Y, Daniel R, Darras K, Denemad LH, Haneda NF, Hertel D, Knohl A, Kotowska MM, Kurniawan S, Mijide A, Rembold K, Prabowo WE, Schneider D, Tscharntke T, Brose U (2017) Direct and cascading impacts of tropical land-use change on multi-trophic biodiversity. Nature Ecology and Evolution.
Rizal A, Tscharntke T, Buchori D, Clough Y (2017) Separating effects of species identity and species richness on predation, pathogen dissemination and resistance to invasive species in tropical ant communities. Agricultural and Forest Entomology. Accepted April 21st 2017
Denmead LH, Darras K, Clough Y, Diaz P, Grass I, Hoffmann MP, Nurdiansyah F, Tscharntke T (2017) The role of ants, birds and bats for ecosystem functions and yield in oil palm plantations. Ecology, 98: 1945-1956.
Lichtenberg E, Kennedy CM, Kremen C, Batáry P, Berendse F, Bommarco R, Bosque-Pérez NA, Carvalheiro LG, Snyder W, Williams NM, Winfree R, Klatt B, Åström S, Benjamin F, Brittain C, Chaplin-Kramer R, Clough Y, Connelly H, Danforth B, Diekötter T, Eigenbrode SD, Ekroos J, Elle E, Freitas B, Fukuda Y, Gaines-Day H, Gratton C, Holzschuh A, Isaacs R, Isaia M, Jha S, Jonason D, Jones VP, Klein A-M, Krauss J, Letourneau D, Macfadyen S, Mallinger RE, Martin EA, Martinez E, Memmott J, Morandin L, Neame L, Otieno M, Park M, Pfiffner L, Pocock MJO, Ponce C, Potts S, Poveda K, Ramos M, Rosenheim JA, Rundlöf M, Sardinas H, Saunders ME, Schon NL, Sciligo A, Sidhu C, Steffan-Dewenter I, Tscharntke T, Vesely M, Weisser WW, Wilson J, Crowder DW. (2017) A global synthesis of the effects of diversified farming systems on arthropod diversity within fields and across agricultural landscapes. Global change Biology. Accepted April 4th 2017.
Bosem Baillod A, Tscharntke T, Clough Y, Batary P (2017) Landscape-scale interactions of spatial and temporal cropland heterogeneity drive biological control of cereal aphids. Journal of Applied Ecology. Early online. Accepted March 29th 2017
Hasund KP, Jonasson L, Smith HG, Stjernman M, Caplat P, Birkhofer K, Clough Y, Hansson H (2017) Bra vallersättning och kompensationsstöd? - Hur kan olika utformningar påverka jordbruket, miljön och samhällsekonomin? Jordbruksverket Utvärderingsrapport 2016:6
Marthy W, Clough Y, Tscharntke T (2017) Assessing the potential for avifaunal recovery in degraded forests in Indonesia. Raffles Bulletin of Zoology 65:35-48.
Häussler J, Sahlin U, Baey C, Smith HG, Clough Y (2017) Predicting pollinator population size and pollination ecosystem service responses to enhancing floral and nesting resources. Ecology and Evolution, 7: 1898-1908.
2016
Marthy W, Clough Y, Tscharntke T (2016) Assessing the biodiversity value of degraded lowland forest in Sumatra, Indonesia. Kukila, 19 1-20.
Schlinkert H, Westphal C, Clough Y, Grass I, Helmerichs J, Tscharntke T (2016) Plant size affects mutualistic and antagonistic interactions and reproductive success across 21 Brassicaceae species. Ecosphere, 7(12), e01529.
Clough Y, Krishna VV, Corre MD, Darras K, Denmead LH, Meijide A, Moser S, Musshoff O, Steinebach S, Veldkamp E, Allen K, Barnes AD, Breidenbach N, Brose U, Buchori D, Daniel R, Finkeldey R, Herahap I, Hertel D, Holtkamp AM, Hörandl E, Irawan B, I Nengah Surati Jaya, Jochum M, Klarner B, Knohl A, Kotowska MM, Krashevska V, Kreft H, Kurniawan S, Leuschner C, Maraun M, Melati, DN, Opfermann N, Pérez-Cruzado C, Prabowo WE, Rembold K, Rizali A, Rubiana R, Schneider D, Tjitrosoedirdjo SS, Tjoa A, Tscharntke T, Scheu S (2016) Land-use choices follow profitability at the expense of ecological functions in Indonesian smallholder landscapes. Nature Communications 7:13137
Teuscher M, Gérard A, Brose U, Buchori D, Clough Y, Ehbrecht M, Hölscher D, Irawan B, Sundawati L, Wollni M, Kreft H (2016) Experimental biodiversity enrichment in oil-palm-dominated landscapes in Indonesia. Frontiers in Plant Science 7:1538
Ganser D, Denmead LH, Clough Y, Buchori D, Tscharntke T (2016) Local and landscape drivers of arthropod diversity and decomposition processes in oil palm leaf axils. Agricultural and Forest Entomology.
Nurdiansyah F, Denmead LH, Clough Y, Wiegand K, Tscharntke T (2016) Biological control in Indonesian oil palm potentially enhances by landscape context. Agriculture, Ecosystems and Environment 232: 141-149.
Prabowo WE, Darras K, Clough Y, Toledo-Hernández M, Arlettaz R, Mulyani YA, Tscharntke T (2016) Bird responses to lowland forest conversion in Sumatran smallholder landscapes, Indonesia. PLoS ONE 11(5): e0154876.
Toledo-Hernández M, Denmead LH, Clough Y, Raffiudin R, Tscharntke T (2016) Cultural homegarden management practices mediate arthropod communities in Indonesia. Journal of Insect Conservation 20:373-382.
Gras P, Tscharntke T, Maas B, Tjoa A, Hafsah A, Clough Y (2016) How ants, birds and bats affect crop yield along shade
gradients in tropical cacao agroforestry. Journal of Applied Ecology.
Drescher J, Rembold K, Allen K, Beckschäfer P, Buchori D, Clough Y et al. (2016) Ecological and socioeconomic functions across
tropical land-use systems after rainforest conversion. Philosphical Transactions R. Soc. B. 361:1694
2015
Schuldt B, Knutzen F, Delzon S, Jansen S, Müller-Haubold H, Burlett R, Clough Y, Leuschner C (2015) How adaptable is the hydraulic system of European beech in the face of climate change-related precipitation reduction? New Phytologist 210: 443-458.
Persson AP, Rundlöf M, Clough Y, Smith HG (2015) Bumble bees show trait-dependent tolerance to landscape simplification. Biodiversity and Conservation 24(14) 3469-3489
Teuscher M, Vorlaufer M, Wollni M, Brose U, Mulyani Y, Clough Y (2015) Trade-offs between bird diversity and abundance, yields and revenue in smallholder oil palm plantations in Sumatra, Indonesia. Biological Conservation, 186, 306-318.
Maas B, Tscharntke T, Saleh S, Dwi Putra D, Clough Y (2015) Avian species identity drives predation success in tropical cacao agroforestry. Journal of Applied Ecology, 52(3), 735-743.
Schlinkert H, Westphal C, Clough Y, Ludwig M, Kabouw P, Tscharntke T (2015) Feeding damage to plants increases with plant size across 21 Brassicaceae species. Oecologia, 1-12.
Schlinkert H, Westphal C, Clough Y, László Z, Ludwig M, Tscharntke T (2015) Plant size as determinant of species richness of herbivores, natural enemies and pollinators across 21 Brassicaceae species. PloS one, 10(8), e0135928.
Rubiana R, Rizali A, Denmead LH, Alamsari W, Hidayat P, Pudjianto, Hindayana D, Clough Y, Tscharntke T, Buchori D (2015) Agricultural land-use alters species composition but not species richness of ant communities. Asian Myrmecology 7:73-85.
Tscharntke T, Milder JC, Schroth G, Clough Y, DeClerck F, Waldron A, (...) Ghazoul J (2015) Conserving biodiversity through certification of tropical agroforestry crops at local and landscape scales. Conservation Letters, 8(1), 14-23.
2014
Clough Y*, Ekroos J*, Báldi A, Batáry P, Bommarco R, Gross N, Holzschuh A, Hopfenmüller S, Knop E, Kuussaari M, Lindborg R, Marini L, Öckinger E, Potts S, Poyry J, Roberts S, Steffan-Dewenter I, Smith, H (2014) Density of insect-pollinated grassland plants decreases with increasing surrounding land-use intensity. Ecology Letters 17:1168-1177 *first two authors contributed equally. DOI
Klein AM, Hendrix SD, Clough Y, Scofield A, Kremen C (2014) Interacting effects of pollination, water and nutrients on fruit tree performance. Plant Biology. Early view DOI
Smith HG, Birkhofer K, Clough Y, Ekroos J, Olsson O, Rundlöf M (in press). Beyond Dispersal: The Role of Animal Movement in Modern Agricultural Landscapes. In: LA Hansson & S Åkesson, Animal Movement across Scales . Oxford University Press (to be published August 2014) ISBN 978-0-19-967719-1 (Paperback)
Tscharntke T, Milder JC, Schroth G, Clough Y, DeClerck F, Waldron A, Rice R, Ghazoul J (2014) Conserving biodiversity through certification of tropical agroforestry crops at local and landscape scales. Conservation Letters DOI: 10.1111/conl.12110
Wielgoss A, Tscharntke T, Rumede A, Fiala B, Seidel H, Shahabuddin, Clough Y (2014) Disentangling services and disservices of ant communities driving yield in tropical agroecosystems. Proceedings of the Royal Society B 281:20132144. DOI
Klatt BK, Holzschuh A, Westphal C, Clough Y, Smit I, Pawelzik E, Tscharntke T (2014) Bee pollination improves crop quality, shelf life and commercial value. Proceedings of the Royal Society B 281:20132440. DOI
2013
Maas B, Clough Y, Tscharntke T (2013) Bats and birds increase crop yield in tropical agroforestry landscapes. Ecology Letters 16:1480-1487. DOI
Tscharntke T, Clough Y (2013) Lassen sich Biodiversitätsschutz und landwirtschaftliche Nuzung im Randbereich tropischer Regenwälder verbinden? In: Bayerische Akademie der Wissenschaften (ed.), Schutz und Nutzung von Tropenwäldern, Rundgespräche der Kommision für Ökologie, 42. Verlag Dr. Friedrich Pfeil ISSN 0938-5851 . ISBN 978-3-89937-156-7.
Rizali A, Clough Y, Buchori D, Tscharntke T (2013) Dissimilarity of ant communities increases with precipitation, but not reduced land-use intensity, in Indonesian cacao agroforestry. Diversity (Special issue: Tropical Forests Ecology and Climate Change) 5(1):26-38. DOI
Jeltsch F, Blaum N, Brose U, Chipperfield JD, Clough Y, Farwig N, Geissler K, Graham CH, Grimm V, Hickler T, Huth A, May F, Meyer KM, Pagel J, Reineking B, Rillig MC, Shea K, Schurr FM, Schröder B, Tielbörger K, Weiss L, Wiegand K, Wirth C, Zurell D (2013) How can we bring together empiricists and modellers in functional biodiversity research? Basic and Applied Ecology. 14(2):93-101. DOI
Sabatier R, Meyer K, Wiegand K, Clough Y (2013) Non-linear effects of pesticide application on biodiversity-driven
ecosystem services and disservices in a cacao agroecosystem: a modeling study. Basic and Applied Ecology. 14(2):115-125. DOI
Rizali A, Clough Y, Buchori D, Hosang MLA, Bos MM, Tscharntke T (2013) Long term change of ant community structure in cacao agroforestry landscapes in Indonesia. Insect Conservation and Diversity 6: 328-333. DOI (published online 22 Aug 2012)
2012
Tscharntke T, Batáry P, Clough Y, Kleijn D, Scherber C, Thies C, Wanger TC & Westphal C (2012. Combining biodiversity conservation with agricultural intensification. In: Lindenmayer, D., Cunningham, S. & Young, A. (eds.) Land use intensification - Effects on agriculture, biodiversity and ecological processes. CSIRO Publishing, Collingwood, Australia, pp. 7-15.
Clough Y (2012) A generalized approach to modeling and estimating indirect effects in ecology. Ecology 93:1809–1815. DOI OPEN ACCESS.
Concepción E, Díaz M, Kleijn D, Báldi A, Batary P, Clough Y, Gabriel D, Herzog F, Holzschuh A, Knop E, Marshall JE, Tscharntke T, Verhulst J (2012) Interactive effects of landscape context constrain the effectiveness of local agri-environment schemes. Journal of Applied Ecology 49 695-705.
Wielgoss AC, Clough Y, Fiala B, Rumede A, Tscharntke T (2012) A minor pest reduces losses by a major pest: plant-mediated herbivore interactions in Indonesian cacao. Journal of Applied Ecology 49(2):465-473. DOI
Covered in Frankfurter Allgemeine Zeitung, November 2nd, 2012
Cicuzza D, Clough Y, Tjitrosoedirdjo SS, Kessler M (2012) Responses of terrestrial herb assemblages to weeding and
fertilization in cacao agroforests in Indonesia. Agroforestry Systems 85(1):75-83. DOI
Stenchly K, Clough Y, Tscharntke T (2012) Spider species richness in cocoa agroforestry systems, comparing vertical
strata, local management and distance to forest. Agriculture, Ecosystems and Environment 149: 189-194. DOI
Tscharntke T, Clough Y, Wanger TC, Jackson L, Motzke I, Perfecto I, Vandermeer J, Whitbread A (2012) Global food security, biodiversity conservation and the future of agricultural intensification. Biological Conservation. 151(1): 53-59. Invited contribution. DOI
Tscharntke T, Tylianakis J, Rand T, Didham R, Fahrig L, Batary P, Bengtsson J, Clough Y, Crist T, Dormann C, Ewers R, Holt R, Holzschuh A, Klein AM, Kremen C, Landis D, Laurance W, Lindenmayer D, Scherber C, Sodhi N, Steffan-Dewenter I, Thies C, VanderPutten W, Westphal C, Fruend J (2012) Landscape moderation of biodiversity patterns - eight hypotheses. Biological Reviews 87(3): 661-685. DOI
2011
Fischer J, Batáry P, Bawa KS, Brussaard L, Chappell MJ, Clough Y, Daily GC, Dorrough J, Hartel T, Jackson LE, Klein AM, Kremen C, Kuemmerle T, Lindenmayer DB, Mooney HA, Perfecto I, Philpott SM, Tscharntke T, Vandermeer J, Wanger TC, Von Wehrden H (2011) Conservation: Limits of land sparing. Science 334 p.593. DOI
Reply to Phalan et al. (“Reconciling food production and biodiversity conservation: Land sharing and land sparing compared”, Reports, 2 September, p. 1289, DOI).
Clough Y, Barkmann J, Juhrbandt J, Kessler M, Wanger TC, Anshary A, Buchori D, Cicuzza D, Darras K, Dwi Putra D, Erasmi S, Pitopang R, Schmidt C, Schulze CH, Seidel D, Steffan-Dewenter I, Stenchly K, Vidal S, Weist M, Wielgoss AC, Tscharntke T (2011) Combining high biodiversity with high yields in tropical agroforests. Proceedings of the National Academy of Sciences (PNAS) 108:8311-8316. DOI OPEN ACCESS
Stenchly K, Clough Y, Buchori D, Tscharntke T (2011) Spider web guilds in cacao agroforestry - comparing tree, plot and landscape scale management. Diversity and Distributions 17:748-756. DOI
Tscharntke T, Clough Y, Bhagwat SA, Buchori D, Faust H, Hertel D, Juhrbandt J, Kessler M, Perfecto I, Scherber C, Schroth, G, Veldkamp E, Wanger TC (2011) Multifunctional shade-tree management in tropical agroforestry landscapes – a review. Journal of Applied Ecology 48:619-629. DOI
Clough Y (2011) Book review: S. Braude and B.S. Low, An Introduction to Methods and Models in Ecology, Evolution and Conservation Biology , Princeton University Press, Princeton, Oxford (2010) 267 pp., ISBN: 978-0-691-12723-1 (cloth), 978-0-691-12724-8 (paper). Basic and Applied Ecology 12:183-184. DOI
Cicuzza D, Kessler M, Clough Y, Pitopang R, Leitner D, Tjitrosoedirdjo SS (2011) Conservation value of cacao agroforests for terrestrial herbaceous plants in Central Sulawesi, Indonesia. Biotropica 43(6): 755-762. DOI
2010
Wanger T, Wielgoss A, Motzke I, Clough Y, Brook BW, Sodhi NS, Tscharntke T (2010) Endemic predators, invasive prey, and native diversity Proceedings of the Royal Society B 278(1706): 690-694. DOI
Sodhi NS, Koh LP, Clements R, Wanger TC, Hill JK, Hamer, KC, Clough Y, Tscharntke T, Posa MRC, Lee TM (2010) Conserving Southeast Asian forest biodiversity in human-modified landscapes. Biological Conservation 143:2375-2384. DOI: 10.1016/j.biocon.2009.12.029
Groeneveld JH, Tscharntke T, Moser G, Clough Y (2010) Experimental evidence for stronger cacao yield limitation by pollination than by plant resources. Perspectives in Plant Ecology, Evolution and Systematics 12:183-191. DOI: 10.1016/j.ppees.2010.02.005
Clough Y, Abrahamczyk S, Adams M-O, Anshary A et al. (2010) Biodiversity and trophic interactions in human-dominated tropical landscapes in Sulawesi (Indonesia). In Tscharntke et al. (Eds.) Tropical rainforests and agroforests under global change. Environmental Series, Springer Verlag, Berlin, Germany. ISBN: 978-3-642-00492-6
Schwendenmann L, Veldkamp E, Moser G, Hölscher D, Köhler M, Clough Y, Anas I, Djajakirana G, Erasmi S, Hertel D, Leitner D, Leuschner Ch, Michalzik B, Propastin P, Tjoa A, Tscharntke T, van Straaten O (2010) Effects of an experimental drought on the functioning of a cacao agroforestry system, Sulawesi, Indonesia. Global Change Biology. 16:1515-1530. DOI: 10.1111/j.1365-2486.2009.02034.x
Wanger TC, Iskandar DT, Motzke I, Brook BW, Sodhi NS, Clough Y, Tscharntke T (2010) Land-use changes affect community composition and traits of tropical amphibians and reptiles in Sulawesi (Indonesia). Conservation Biology 24: 795-802. DOI: 10.1111/j.1523-1739.2009.01434.x
Weist M, Tscharntke T, Sinaga MH, Maryanto I, Clough Y (2010) Effect of distance to forest and habitat characteristics on endemic versus introduced rat species in agroforest landscapes of Central Sulawesi, Indonesia. Mammalian Biology 75: 567-571. DOI: 10.1016/j.mambio.2009.09.004
Wielgoss A, Tscharntke T, Buchori D, Fiala B, Clough Y (2010) Temperature and a dominant dolichoderine ant species affect ant diversity in Indonesian cacao plantations. Agriculture Ecosystems and Environment 135:253-259.
2009
Clough Y, Faust H, Tscharntke T (2009) Cacao boom, cacao bust: sustainability of agroforests and opportunities for biodiversity conservation. Conservation Letters 2: 197-205.
Clough Y, Dwi Putra D, Pitopang R, Tscharntke T (2009) Local and landscape factors determine functional bird diversity in Indonesian cacao agroforestry. Biological Conservation 142:1032-1041.
Maas B, Putra DD, Waltert M, Clough Y, Tscharntke T, Schulze C (2009) Six years of habitat modification in a tropical rainforest margin of Indonesia do not affect bird diversity but endemic forest species. Biological Conservation 142:2665-2671.
Wanger TC, Saro A, Iskandar DT, Brook BW, Sodhi NS, Clough Y, Tscharntke T (2009) Conservation value of cacao agroforestry for amphibians and reptiles in Southeast Asia: combining correlative models with follow-up field experiments. Journal of Applied Ecology 46:823-832.
Kleijn D, Kohler F, Báldi A, Batáry P, Concepción ED, Clough Y, Díaz M, Gabriel D, Holzschuh A, Knop E, Kovács A, Marshall EJP, Tscharntke T, Verhulst J (2009) On the relationship between farmland biodiversity and land-use intensity in Europe. Proceedings of the Royal Society B. 276: 903-909.
2008
Tscharntke T, Bommarco R, Clough Y, Crist TO, Kleijn D, Rand TA, Tylianakis JM, van Nouhuys S, Vidal S (2008) Conservation biological control and enemy diversity on a landscape scale. Biological Control 43: 294-309.
2007
Clough Y, Holzschuh A, Gabriel D, Purtauf T, Kruess A, Steffan-Dewenter I, Kleijn D, Tscharntke T (2007) Alpha and beta diversity of arthropods and plants in organically and conventionally managed wheat fields. Journal of Applied Ecology 44: 804-812.
Clough Y, Kruess A, Tscharntke T (2007) Local and landscape factors in differently managed arable fields affect the insect herbivore community of a non-crop plant species. Journal of Applied Ecology 44, 22-28.
Clough Y, Kruess A, Tscharntke T (2007) Organic versus conventional farming systems: functional grouping helps understand staphylinid response. Agriculture, Ecosystems & Environment 118, 285-290.
2006
Schmidt MH, Clough Y, Schulz W, Westphalen A, Tscharntke T (2006) Capture efficiency and preservation attributes of different fluids in pitfall traps. Journal of Arachnology 34, 159-162.
Kleijn D, Baquero, RA, Clough, Y, Díaz, M, De Esteban, J, Fernández, F, Gabriel, D, Herzog, F, Holzschuh, A, Jöhl, R, Knop, E, Kruess, A, Marshall, EJP, Steffan-Dewenter, I, Tscharntke, T, Verhulst, J, West, TM, Yela, JL (2006) Mixed biodiversity benefits of agri-environment schemes implemented in contrasting European countries. Ecology Letters 9, 243-253.
2005
Clough Y, Kruess A, Kleijn D, Tscharntke T (2005) Spider diversity in cereal fields: comparing factors at local, landscape and regional scales. Journal of Biogeography 32, 2007-2014.
Bukovinszky T, Potting RPJ, Clough Y, van Lenteren JC, Vet LEM (2005) The role of pre- and post-alighting detection mechanisms in the responses to patch size by specialist herbivores. Oikos 109, 435-446.
2002 - 2004
Bukovinszky T, Potting, RPJ, Clough Y, van Lenteren JC, Vet LEM (2003) Responses of insect herbivores to habitat texture: the role of foraging strategy. Landscape Management and Functional Biodiversity. IOBC/WPRS Bulletin 26:25-29.
Clough Y, Bukovinszky T, van Lenteren JC van, Vet LEM (2002) Evaluating pest pressure in the Brussels sprouts-barley intercropping system: influence of host plant patch size and surrounding vegetation. Proceedings Experimental and Applied Entomology, NEV Amsterdam. 13:123-126.
Dänhardt J, Nilsson L, Hristov J, Alkan Olsson J, Brady M, Olsson P, Smith HG, Clough Y (2017) Ekologiska fokusarealer i samverkan - Utvärdering av effekter på ekosystemtjänster, jordbruk och administration. Naturvårdsverket Rapport 6773. ISBN 978-91-620-6773-1. [report to the Swedish EPA on collective implementation of ecological focus areas and impacts on ecosystem services, agriculture and administration, summary in English]
Schmidt FA, Ribas CR, Sobrinho TG, Ubaidillah R, Schoereder JH, Clough Y, Tscharntke T (in press) Similar alpha and beta diversity changes in tropical ant communities, comparing savannas to rainforests in Brazil and Indonesia. Oecologia. Accepted September 9th 2017
Clough Y, Philpott S, Tscharntke T (2017). Services and disservices of ant communities in tropical cacao and coffee agroforestry systems. In Ant-Plant Interactions: Impacts of Humans on Terrestrial Ecosystems, Ed. by: Paulo S. Oliveira, Suzanne Koptur. Cambridge University Press. August 2017. ISBN 978-11-071-5975-4.
Barnes AD, Allen K, Kreft H, Clough Y, Jochum M, Veldkamp E, Clough Y, Daniel R, Darras K, Denemad LH, Haneda NF, Hertel D, Knohl A, Kotowska MM, Kurniawan S, Mijide A, Rembold K, Prabowo WE, Schneider D, Tscharntke T, Brose U (2017) Direct and cascading impacts of tropical land-use change on multi-trophic biodiversity. Nature Ecology and Evolution.
Rizal A, Tscharntke T, Buchori D, Clough Y (2017) Separating effects of species identity and species richness on predation, pathogen dissemination and resistance to invasive species in tropical ant communities. Agricultural and Forest Entomology. Accepted April 21st 2017
Denmead LH, Darras K, Clough Y, Diaz P, Grass I, Hoffmann MP, Nurdiansyah F, Tscharntke T (2017) The role of ants, birds and bats for ecosystem functions and yield in oil palm plantations. Ecology, 98: 1945-1956.
Lichtenberg E, Kennedy CM, Kremen C, Batáry P, Berendse F, Bommarco R, Bosque-Pérez NA, Carvalheiro LG, Snyder W, Williams NM, Winfree R, Klatt B, Åström S, Benjamin F, Brittain C, Chaplin-Kramer R, Clough Y, Connelly H, Danforth B, Diekötter T, Eigenbrode SD, Ekroos J, Elle E, Freitas B, Fukuda Y, Gaines-Day H, Gratton C, Holzschuh A, Isaacs R, Isaia M, Jha S, Jonason D, Jones VP, Klein A-M, Krauss J, Letourneau D, Macfadyen S, Mallinger RE, Martin EA, Martinez E, Memmott J, Morandin L, Neame L, Otieno M, Park M, Pfiffner L, Pocock MJO, Ponce C, Potts S, Poveda K, Ramos M, Rosenheim JA, Rundlöf M, Sardinas H, Saunders ME, Schon NL, Sciligo A, Sidhu C, Steffan-Dewenter I, Tscharntke T, Vesely M, Weisser WW, Wilson J, Crowder DW. (2017) A global synthesis of the effects of diversified farming systems on arthropod diversity within fields and across agricultural landscapes. Global change Biology. Accepted April 4th 2017.
Bosem Baillod A, Tscharntke T, Clough Y, Batary P (2017) Landscape-scale interactions of spatial and temporal cropland heterogeneity drive biological control of cereal aphids. Journal of Applied Ecology. Early online. Accepted March 29th 2017
Hasund KP, Jonasson L, Smith HG, Stjernman M, Caplat P, Birkhofer K, Clough Y, Hansson H (2017) Bra vallersättning och kompensationsstöd? - Hur kan olika utformningar påverka jordbruket, miljön och samhällsekonomin? Jordbruksverket Utvärderingsrapport 2016:6
Marthy W, Clough Y, Tscharntke T (2017) Assessing the potential for avifaunal recovery in degraded forests in Indonesia. Raffles Bulletin of Zoology 65:35-48.
Häussler J, Sahlin U, Baey C, Smith HG, Clough Y (2017) Predicting pollinator population size and pollination ecosystem service responses to enhancing floral and nesting resources. Ecology and Evolution, 7: 1898-1908.
2016
Marthy W, Clough Y, Tscharntke T (2016) Assessing the biodiversity value of degraded lowland forest in Sumatra, Indonesia. Kukila, 19 1-20.
Schlinkert H, Westphal C, Clough Y, Grass I, Helmerichs J, Tscharntke T (2016) Plant size affects mutualistic and antagonistic interactions and reproductive success across 21 Brassicaceae species. Ecosphere, 7(12), e01529.
Clough Y, Krishna VV, Corre MD, Darras K, Denmead LH, Meijide A, Moser S, Musshoff O, Steinebach S, Veldkamp E, Allen K, Barnes AD, Breidenbach N, Brose U, Buchori D, Daniel R, Finkeldey R, Herahap I, Hertel D, Holtkamp AM, Hörandl E, Irawan B, I Nengah Surati Jaya, Jochum M, Klarner B, Knohl A, Kotowska MM, Krashevska V, Kreft H, Kurniawan S, Leuschner C, Maraun M, Melati, DN, Opfermann N, Pérez-Cruzado C, Prabowo WE, Rembold K, Rizali A, Rubiana R, Schneider D, Tjitrosoedirdjo SS, Tjoa A, Tscharntke T, Scheu S (2016) Land-use choices follow profitability at the expense of ecological functions in Indonesian smallholder landscapes. Nature Communications 7:13137
Teuscher M, Gérard A, Brose U, Buchori D, Clough Y, Ehbrecht M, Hölscher D, Irawan B, Sundawati L, Wollni M, Kreft H (2016) Experimental biodiversity enrichment in oil-palm-dominated landscapes in Indonesia. Frontiers in Plant Science 7:1538
Ganser D, Denmead LH, Clough Y, Buchori D, Tscharntke T (2016) Local and landscape drivers of arthropod diversity and decomposition processes in oil palm leaf axils. Agricultural and Forest Entomology.
Nurdiansyah F, Denmead LH, Clough Y, Wiegand K, Tscharntke T (2016) Biological control in Indonesian oil palm potentially enhances by landscape context. Agriculture, Ecosystems and Environment 232: 141-149.
Prabowo WE, Darras K, Clough Y, Toledo-Hernández M, Arlettaz R, Mulyani YA, Tscharntke T (2016) Bird responses to lowland forest conversion in Sumatran smallholder landscapes, Indonesia. PLoS ONE 11(5): e0154876.
Toledo-Hernández M, Denmead LH, Clough Y, Raffiudin R, Tscharntke T (2016) Cultural homegarden management practices mediate arthropod communities in Indonesia. Journal of Insect Conservation 20:373-382.
Gras P, Tscharntke T, Maas B, Tjoa A, Hafsah A, Clough Y (2016) How ants, birds and bats affect crop yield along shade
gradients in tropical cacao agroforestry. Journal of Applied Ecology.
Drescher J, Rembold K, Allen K, Beckschäfer P, Buchori D, Clough Y et al. (2016) Ecological and socioeconomic functions across
tropical land-use systems after rainforest conversion. Philosphical Transactions R. Soc. B. 361:1694
2015
Schuldt B, Knutzen F, Delzon S, Jansen S, Müller-Haubold H, Burlett R, Clough Y, Leuschner C (2015) How adaptable is the hydraulic system of European beech in the face of climate change-related precipitation reduction? New Phytologist 210: 443-458.
Persson AP, Rundlöf M, Clough Y, Smith HG (2015) Bumble bees show trait-dependent tolerance to landscape simplification. Biodiversity and Conservation 24(14) 3469-3489
Teuscher M, Vorlaufer M, Wollni M, Brose U, Mulyani Y, Clough Y (2015) Trade-offs between bird diversity and abundance, yields and revenue in smallholder oil palm plantations in Sumatra, Indonesia. Biological Conservation, 186, 306-318.
Maas B, Tscharntke T, Saleh S, Dwi Putra D, Clough Y (2015) Avian species identity drives predation success in tropical cacao agroforestry. Journal of Applied Ecology, 52(3), 735-743.
Schlinkert H, Westphal C, Clough Y, Ludwig M, Kabouw P, Tscharntke T (2015) Feeding damage to plants increases with plant size across 21 Brassicaceae species. Oecologia, 1-12.
Schlinkert H, Westphal C, Clough Y, László Z, Ludwig M, Tscharntke T (2015) Plant size as determinant of species richness of herbivores, natural enemies and pollinators across 21 Brassicaceae species. PloS one, 10(8), e0135928.
Rubiana R, Rizali A, Denmead LH, Alamsari W, Hidayat P, Pudjianto, Hindayana D, Clough Y, Tscharntke T, Buchori D (2015) Agricultural land-use alters species composition but not species richness of ant communities. Asian Myrmecology 7:73-85.
Tscharntke T, Milder JC, Schroth G, Clough Y, DeClerck F, Waldron A, (...) Ghazoul J (2015) Conserving biodiversity through certification of tropical agroforestry crops at local and landscape scales. Conservation Letters, 8(1), 14-23.
2014
Clough Y*, Ekroos J*, Báldi A, Batáry P, Bommarco R, Gross N, Holzschuh A, Hopfenmüller S, Knop E, Kuussaari M, Lindborg R, Marini L, Öckinger E, Potts S, Poyry J, Roberts S, Steffan-Dewenter I, Smith, H (2014) Density of insect-pollinated grassland plants decreases with increasing surrounding land-use intensity. Ecology Letters 17:1168-1177 *first two authors contributed equally. DOI
Klein AM, Hendrix SD, Clough Y, Scofield A, Kremen C (2014) Interacting effects of pollination, water and nutrients on fruit tree performance. Plant Biology. Early view DOI
Smith HG, Birkhofer K, Clough Y, Ekroos J, Olsson O, Rundlöf M (in press). Beyond Dispersal: The Role of Animal Movement in Modern Agricultural Landscapes. In: LA Hansson & S Åkesson, Animal Movement across Scales . Oxford University Press (to be published August 2014) ISBN 978-0-19-967719-1 (Paperback)
Tscharntke T, Milder JC, Schroth G, Clough Y, DeClerck F, Waldron A, Rice R, Ghazoul J (2014) Conserving biodiversity through certification of tropical agroforestry crops at local and landscape scales. Conservation Letters DOI: 10.1111/conl.12110
Wielgoss A, Tscharntke T, Rumede A, Fiala B, Seidel H, Shahabuddin, Clough Y (2014) Disentangling services and disservices of ant communities driving yield in tropical agroecosystems. Proceedings of the Royal Society B 281:20132144. DOI
Klatt BK, Holzschuh A, Westphal C, Clough Y, Smit I, Pawelzik E, Tscharntke T (2014) Bee pollination improves crop quality, shelf life and commercial value. Proceedings of the Royal Society B 281:20132440. DOI
2013
Maas B, Clough Y, Tscharntke T (2013) Bats and birds increase crop yield in tropical agroforestry landscapes. Ecology Letters 16:1480-1487. DOI
Tscharntke T, Clough Y (2013) Lassen sich Biodiversitätsschutz und landwirtschaftliche Nuzung im Randbereich tropischer Regenwälder verbinden? In: Bayerische Akademie der Wissenschaften (ed.), Schutz und Nutzung von Tropenwäldern, Rundgespräche der Kommision für Ökologie, 42. Verlag Dr. Friedrich Pfeil ISSN 0938-5851 . ISBN 978-3-89937-156-7.
Rizali A, Clough Y, Buchori D, Tscharntke T (2013) Dissimilarity of ant communities increases with precipitation, but not reduced land-use intensity, in Indonesian cacao agroforestry. Diversity (Special issue: Tropical Forests Ecology and Climate Change) 5(1):26-38. DOI
Jeltsch F, Blaum N, Brose U, Chipperfield JD, Clough Y, Farwig N, Geissler K, Graham CH, Grimm V, Hickler T, Huth A, May F, Meyer KM, Pagel J, Reineking B, Rillig MC, Shea K, Schurr FM, Schröder B, Tielbörger K, Weiss L, Wiegand K, Wirth C, Zurell D (2013) How can we bring together empiricists and modellers in functional biodiversity research? Basic and Applied Ecology. 14(2):93-101. DOI
Sabatier R, Meyer K, Wiegand K, Clough Y (2013) Non-linear effects of pesticide application on biodiversity-driven
ecosystem services and disservices in a cacao agroecosystem: a modeling study. Basic and Applied Ecology. 14(2):115-125. DOI
Rizali A, Clough Y, Buchori D, Hosang MLA, Bos MM, Tscharntke T (2013) Long term change of ant community structure in cacao agroforestry landscapes in Indonesia. Insect Conservation and Diversity 6: 328-333. DOI (published online 22 Aug 2012)
2012
Tscharntke T, Batáry P, Clough Y, Kleijn D, Scherber C, Thies C, Wanger TC & Westphal C (2012. Combining biodiversity conservation with agricultural intensification. In: Lindenmayer, D., Cunningham, S. & Young, A. (eds.) Land use intensification - Effects on agriculture, biodiversity and ecological processes. CSIRO Publishing, Collingwood, Australia, pp. 7-15.
Clough Y (2012) A generalized approach to modeling and estimating indirect effects in ecology. Ecology 93:1809–1815. DOI OPEN ACCESS.
Concepción E, Díaz M, Kleijn D, Báldi A, Batary P, Clough Y, Gabriel D, Herzog F, Holzschuh A, Knop E, Marshall JE, Tscharntke T, Verhulst J (2012) Interactive effects of landscape context constrain the effectiveness of local agri-environment schemes. Journal of Applied Ecology 49 695-705.
Wielgoss AC, Clough Y, Fiala B, Rumede A, Tscharntke T (2012) A minor pest reduces losses by a major pest: plant-mediated herbivore interactions in Indonesian cacao. Journal of Applied Ecology 49(2):465-473. DOI
Covered in Frankfurter Allgemeine Zeitung, November 2nd, 2012
Cicuzza D, Clough Y, Tjitrosoedirdjo SS, Kessler M (2012) Responses of terrestrial herb assemblages to weeding and
fertilization in cacao agroforests in Indonesia. Agroforestry Systems 85(1):75-83. DOI
Stenchly K, Clough Y, Tscharntke T (2012) Spider species richness in cocoa agroforestry systems, comparing vertical
strata, local management and distance to forest. Agriculture, Ecosystems and Environment 149: 189-194. DOI
Tscharntke T, Clough Y, Wanger TC, Jackson L, Motzke I, Perfecto I, Vandermeer J, Whitbread A (2012) Global food security, biodiversity conservation and the future of agricultural intensification. Biological Conservation. 151(1): 53-59. Invited contribution. DOI
Tscharntke T, Tylianakis J, Rand T, Didham R, Fahrig L, Batary P, Bengtsson J, Clough Y, Crist T, Dormann C, Ewers R, Holt R, Holzschuh A, Klein AM, Kremen C, Landis D, Laurance W, Lindenmayer D, Scherber C, Sodhi N, Steffan-Dewenter I, Thies C, VanderPutten W, Westphal C, Fruend J (2012) Landscape moderation of biodiversity patterns - eight hypotheses. Biological Reviews 87(3): 661-685. DOI
2011
Fischer J, Batáry P, Bawa KS, Brussaard L, Chappell MJ, Clough Y, Daily GC, Dorrough J, Hartel T, Jackson LE, Klein AM, Kremen C, Kuemmerle T, Lindenmayer DB, Mooney HA, Perfecto I, Philpott SM, Tscharntke T, Vandermeer J, Wanger TC, Von Wehrden H (2011) Conservation: Limits of land sparing. Science 334 p.593. DOI
Reply to Phalan et al. (“Reconciling food production and biodiversity conservation: Land sharing and land sparing compared”, Reports, 2 September, p. 1289, DOI).
Clough Y, Barkmann J, Juhrbandt J, Kessler M, Wanger TC, Anshary A, Buchori D, Cicuzza D, Darras K, Dwi Putra D, Erasmi S, Pitopang R, Schmidt C, Schulze CH, Seidel D, Steffan-Dewenter I, Stenchly K, Vidal S, Weist M, Wielgoss AC, Tscharntke T (2011) Combining high biodiversity with high yields in tropical agroforests. Proceedings of the National Academy of Sciences (PNAS) 108:8311-8316. DOI OPEN ACCESS
Stenchly K, Clough Y, Buchori D, Tscharntke T (2011) Spider web guilds in cacao agroforestry - comparing tree, plot and landscape scale management. Diversity and Distributions 17:748-756. DOI
Tscharntke T, Clough Y, Bhagwat SA, Buchori D, Faust H, Hertel D, Juhrbandt J, Kessler M, Perfecto I, Scherber C, Schroth, G, Veldkamp E, Wanger TC (2011) Multifunctional shade-tree management in tropical agroforestry landscapes – a review. Journal of Applied Ecology 48:619-629. DOI
Clough Y (2011) Book review: S. Braude and B.S. Low, An Introduction to Methods and Models in Ecology, Evolution and Conservation Biology , Princeton University Press, Princeton, Oxford (2010) 267 pp., ISBN: 978-0-691-12723-1 (cloth), 978-0-691-12724-8 (paper). Basic and Applied Ecology 12:183-184. DOI
Cicuzza D, Kessler M, Clough Y, Pitopang R, Leitner D, Tjitrosoedirdjo SS (2011) Conservation value of cacao agroforests for terrestrial herbaceous plants in Central Sulawesi, Indonesia. Biotropica 43(6): 755-762. DOI
2010
Wanger T, Wielgoss A, Motzke I, Clough Y, Brook BW, Sodhi NS, Tscharntke T (2010) Endemic predators, invasive prey, and native diversity Proceedings of the Royal Society B 278(1706): 690-694. DOI
Sodhi NS, Koh LP, Clements R, Wanger TC, Hill JK, Hamer, KC, Clough Y, Tscharntke T, Posa MRC, Lee TM (2010) Conserving Southeast Asian forest biodiversity in human-modified landscapes. Biological Conservation 143:2375-2384. DOI: 10.1016/j.biocon.2009.12.029
Groeneveld JH, Tscharntke T, Moser G, Clough Y (2010) Experimental evidence for stronger cacao yield limitation by pollination than by plant resources. Perspectives in Plant Ecology, Evolution and Systematics 12:183-191. DOI: 10.1016/j.ppees.2010.02.005
Clough Y, Abrahamczyk S, Adams M-O, Anshary A et al. (2010) Biodiversity and trophic interactions in human-dominated tropical landscapes in Sulawesi (Indonesia). In Tscharntke et al. (Eds.) Tropical rainforests and agroforests under global change. Environmental Series, Springer Verlag, Berlin, Germany. ISBN: 978-3-642-00492-6
Schwendenmann L, Veldkamp E, Moser G, Hölscher D, Köhler M, Clough Y, Anas I, Djajakirana G, Erasmi S, Hertel D, Leitner D, Leuschner Ch, Michalzik B, Propastin P, Tjoa A, Tscharntke T, van Straaten O (2010) Effects of an experimental drought on the functioning of a cacao agroforestry system, Sulawesi, Indonesia. Global Change Biology. 16:1515-1530. DOI: 10.1111/j.1365-2486.2009.02034.x
Wanger TC, Iskandar DT, Motzke I, Brook BW, Sodhi NS, Clough Y, Tscharntke T (2010) Land-use changes affect community composition and traits of tropical amphibians and reptiles in Sulawesi (Indonesia). Conservation Biology 24: 795-802. DOI: 10.1111/j.1523-1739.2009.01434.x
Weist M, Tscharntke T, Sinaga MH, Maryanto I, Clough Y (2010) Effect of distance to forest and habitat characteristics on endemic versus introduced rat species in agroforest landscapes of Central Sulawesi, Indonesia. Mammalian Biology 75: 567-571. DOI: 10.1016/j.mambio.2009.09.004
Wielgoss A, Tscharntke T, Buchori D, Fiala B, Clough Y (2010) Temperature and a dominant dolichoderine ant species affect ant diversity in Indonesian cacao plantations. Agriculture Ecosystems and Environment 135:253-259.
2009
Clough Y, Faust H, Tscharntke T (2009) Cacao boom, cacao bust: sustainability of agroforests and opportunities for biodiversity conservation. Conservation Letters 2: 197-205.
Clough Y, Dwi Putra D, Pitopang R, Tscharntke T (2009) Local and landscape factors determine functional bird diversity in Indonesian cacao agroforestry. Biological Conservation 142:1032-1041.
Maas B, Putra DD, Waltert M, Clough Y, Tscharntke T, Schulze C (2009) Six years of habitat modification in a tropical rainforest margin of Indonesia do not affect bird diversity but endemic forest species. Biological Conservation 142:2665-2671.
Wanger TC, Saro A, Iskandar DT, Brook BW, Sodhi NS, Clough Y, Tscharntke T (2009) Conservation value of cacao agroforestry for amphibians and reptiles in Southeast Asia: combining correlative models with follow-up field experiments. Journal of Applied Ecology 46:823-832.
Kleijn D, Kohler F, Báldi A, Batáry P, Concepción ED, Clough Y, Díaz M, Gabriel D, Holzschuh A, Knop E, Kovács A, Marshall EJP, Tscharntke T, Verhulst J (2009) On the relationship between farmland biodiversity and land-use intensity in Europe. Proceedings of the Royal Society B. 276: 903-909.
2008
Tscharntke T, Bommarco R, Clough Y, Crist TO, Kleijn D, Rand TA, Tylianakis JM, van Nouhuys S, Vidal S (2008) Conservation biological control and enemy diversity on a landscape scale. Biological Control 43: 294-309.
2007
Clough Y, Holzschuh A, Gabriel D, Purtauf T, Kruess A, Steffan-Dewenter I, Kleijn D, Tscharntke T (2007) Alpha and beta diversity of arthropods and plants in organically and conventionally managed wheat fields. Journal of Applied Ecology 44: 804-812.
Clough Y, Kruess A, Tscharntke T (2007) Local and landscape factors in differently managed arable fields affect the insect herbivore community of a non-crop plant species. Journal of Applied Ecology 44, 22-28.
Clough Y, Kruess A, Tscharntke T (2007) Organic versus conventional farming systems: functional grouping helps understand staphylinid response. Agriculture, Ecosystems & Environment 118, 285-290.
2006
Schmidt MH, Clough Y, Schulz W, Westphalen A, Tscharntke T (2006) Capture efficiency and preservation attributes of different fluids in pitfall traps. Journal of Arachnology 34, 159-162.
Kleijn D, Baquero, RA, Clough, Y, Díaz, M, De Esteban, J, Fernández, F, Gabriel, D, Herzog, F, Holzschuh, A, Jöhl, R, Knop, E, Kruess, A, Marshall, EJP, Steffan-Dewenter, I, Tscharntke, T, Verhulst, J, West, TM, Yela, JL (2006) Mixed biodiversity benefits of agri-environment schemes implemented in contrasting European countries. Ecology Letters 9, 243-253.
2005
Clough Y, Kruess A, Kleijn D, Tscharntke T (2005) Spider diversity in cereal fields: comparing factors at local, landscape and regional scales. Journal of Biogeography 32, 2007-2014.
Bukovinszky T, Potting RPJ, Clough Y, van Lenteren JC, Vet LEM (2005) The role of pre- and post-alighting detection mechanisms in the responses to patch size by specialist herbivores. Oikos 109, 435-446.
2002 - 2004
Bukovinszky T, Potting, RPJ, Clough Y, van Lenteren JC, Vet LEM (2003) Responses of insect herbivores to habitat texture: the role of foraging strategy. Landscape Management and Functional Biodiversity. IOBC/WPRS Bulletin 26:25-29.
Clough Y, Bukovinszky T, van Lenteren JC van, Vet LEM (2002) Evaluating pest pressure in the Brussels sprouts-barley intercropping system: influence of host plant patch size and surrounding vegetation. Proceedings Experimental and Applied Entomology, NEV Amsterdam. 13:123-126.